STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
birABiotin--acetyl-CoA-carboxylase ligase BirA. (260 aa)    
Predicted Functional Partners:
accD
accD Acetyl-/propionyl-CoA carboxylase beta chain.
 
 
 0.905
BDP_1310
ATP-dependent carboxylate-amine ligase.
  
 0.836
accC
accC Acetyl-/propionyl-CoA carboxylase alpha chain.
 
  
 0.787
BDP_0107
Biotin-dependent acyl-CoA carboxylase.
 
  
 0.741
sixA
Phosphohistidine phosphatase SixA.
      
 0.726
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
      
 0.715
BDP_0552
Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
  
  
 0.695
maa
Maa Maltose O-acetyltransferase.
  
  
 0.651
maa-2
Maa Maltose O-acetyltransferase.
  
  
 0.651
tkt
Transketolase; Belongs to the transketolase family.
      
 0.646
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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