STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
accDaccD Acetyl-/propionyl-CoA carboxylase beta chain. (533 aa)    
Predicted Functional Partners:
accC
accC Acetyl-/propionyl-CoA carboxylase alpha chain.
 
 0.999
BDP_0107
Biotin-dependent acyl-CoA carboxylase.
 
 0.996
pta
Phosphate acetyltransferase.
    
 0.906
birA
Biotin--acetyl-CoA-carboxylase ligase BirA.
 
 
 0.905
pfl
Pfl Formate acetyltransferase.
     
  0.900
fas
Fatty acid synthase Fas.
 
 
 0.856
BDP_0106
Urea amidolyase related protein.
   
   0.851
argD-3
ArgD Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
 
  0.805
BDP_0359
Putative BioY-family protein.
       0.663
acpS
Putative holo-[acyl-carrier protein] synthase3; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.
 
   
 0.645
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.