STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fasFatty acid synthase Fas. (3117 aa)    
Predicted Functional Partners:
accC
accC Acetyl-/propionyl-CoA carboxylase alpha chain.
  
 
 0.981
BDP_0107
Biotin-dependent acyl-CoA carboxylase.
  
 
 0.946
acpS
Putative holo-[acyl-carrier protein] synthase3; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.
 
   
 0.937
gltA
gltA Citrate synthase; Belongs to the citrate synthase family.
    
 0.923
BDP_1047
Long-chain-fatty acid CoA ligase.
    
 0.904
fadH3
fadD3 Long-chain-fatty-acid--CoA ligase.
    
 0.904
fadD1
fadD1 Long-chain-fatty-acid--CoA ligase.
    
 0.904
fadD
long-chain-fatty-acid--CoA ligase.
    
 0.904
accD
accD Acetyl-/propionyl-CoA carboxylase beta chain.
 
 
 0.856
atpA
ATP synthase alpha chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.
   
 
  0.754
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.