STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0369Conserved hypothetical membrane spanning protein. (763 aa)    
Predicted Functional Partners:
lemA
lemA LemA protein.
 
     0.802
BDP_0370
Oxidoreductase, aldo/keto reductase family.
  
    0.697
BDP_1331
Narrowly conserved hypothetical protein.
  
     0.656
BDP_0234
Phosphohydrolase, calcineurin-like phosphoesterase.
  
     0.646
BDP_2085
Glutamine amidotransferase, class-II.
  
     0.609
pnp
Pnp Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
       0.590
BDP_1170
Conserved hypothetical protein.
  
     0.547
crcB
crcB-like protein, campher resistance; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.
  
    0.522
BDP_1332
Narrowly conserved hypothetical membrane spanning protein.
  
    0.487
BDP_1615
Hydrolases of the alpha/beta superfamily.
 
     0.484
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.