STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0374Conserved hypothetical protein. (321 aa)    
Predicted Functional Partners:
BDP_1442
AraC/XylS family transcriptional regulator.
 
 
 0.743
BDP_0226
AraC-type transcriptional regulator.
 
 
 0.716
BDP_1650
Transcriptional regulator, AraC family.
 
 
 0.687
BDP_0835
Transcriptional regulator, AraC family.
 
 
 0.635
BDP_1318
Transcriptional regulator, AraC family.
 
 
 0.628
hrdB
RNA polymerase principal sigma factor hrdB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.506
BDP_2077
RNA polymerase sigma factor.
   
 
 0.482
lexA
LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response).
   
 
 0.478
BDP_0375
U32-family peptidase.
       0.475
bdhA
bdhA NADH-dependent butanol dehydrogenase.
  
    0.467
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.