Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0374Conserved hypothetical protein. (321 aa)    
Predicted Functional Partners:
BDP_1442
AraC/XylS family transcriptional regulator.
 
 
 0.725
BDP_0226
AraC-type transcriptional regulator.
 
 
 0.697
BDP_1650
Transcriptional regulator, AraC family.
 
 
 0.665
BDP_1318
Transcriptional regulator, AraC family.
 
 
 0.636
BDP_0835
Transcriptional regulator, AraC family.
 
 
 0.610
BDP_0375
U32-family peptidase.
       0.475
hrdB
RNA polymerase principal sigma factor hrdB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.467
lexA
LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response).
   
 
 0.425
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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