Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
phoRPhosphate regulon sensor protein phoR. (456 aa)    
Predicted Functional Partners:
vicR
Response regulator protein VicR.
 0.998
BDP_0519
Pho-related sensory transduction protein kinase.
 
0.938
BDP_0775
Two-component response regulator.
 
 0.894
BDP_0892
Response regulator of two-component system.
 
 0.890
BDP_1973
Response regulator-like transcriptional regulatory protein.
 
 
 0.839
pstS
pstS Phosphate-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.
     
 0.591
BDP_0384
Hypothetical protein.
       0.552
BDP_0057
Serine protease.
 
  
 0.526
BDP_0500
Histidine kinase sensor of two component system.
  
 
 0.505
pstA
pstA Phosphate transport system permease protein.
 
  
 0.473
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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