BDP_0392 protein (Bifidobacterium dentium) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BDP_0392

Solute binding protein of ABC transporter system. (301 aa)

Predicted Functional Partners:

BDP_0896

0.926

BDP_0897

0.898

BDP_1884

0.486

rpmB-2

0.469

BDP_1878

0.463

pstB

0.460

rpsN-2

0.416

purL

0.409

Your Current Organism:

Bifidobacterium dentium

NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDP_0392	BDP_0896	BDP_0392	BDP_0896	Solute binding protein of ABC transporter system.	ABC transporter permease.	0.926
BDP_0392	BDP_0897	BDP_0392	BDP_0897	Solute binding protein of ABC transporter system.	ATP binding protein of ABC transporter.	0.898
BDP_0392	BDP_1878	BDP_0392	BDP_1878	Solute binding protein of ABC transporter system.	Solute binding protein of ABC transporter system, YodA-like protein.	0.463
BDP_0392	BDP_1884	BDP_0392	BDP_1884	Solute binding protein of ABC transporter system.	Hypothetical protein.	0.486
BDP_0392	pstB	BDP_0392	BDP_0391	Solute binding protein of ABC transporter system.	pstB Phosphate transport ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	0.460
BDP_0392	purL	BDP_0392	BDP_0725	Solute binding protein of ABC transporter system.	purL Phosphoribosylformylglycinamidine synthase.	0.409
BDP_0392	rpmB-2	BDP_0392	BDP_1883	Solute binding protein of ABC transporter system.	50S ribosomal protein L28,50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.469
BDP_0392	rpsN-2	BDP_0392	BDP_1881	Solute binding protein of ABC transporter system.	30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.	0.416
BDP_0896	BDP_0392	BDP_0896	BDP_0392	ABC transporter permease.	Solute binding protein of ABC transporter system.	0.926
BDP_0896	BDP_0897	BDP_0896	BDP_0897	ABC transporter permease.	ATP binding protein of ABC transporter.	0.999
BDP_0896	BDP_1878	BDP_0896	BDP_1878	ABC transporter permease.	Solute binding protein of ABC transporter system, YodA-like protein.	0.994
BDP_0896	BDP_1884	BDP_0896	BDP_1884	ABC transporter permease.	Hypothetical protein.	0.419
BDP_0897	BDP_0392	BDP_0897	BDP_0392	ATP binding protein of ABC transporter.	Solute binding protein of ABC transporter system.	0.898
BDP_0897	BDP_0896	BDP_0897	BDP_0896	ATP binding protein of ABC transporter.	ABC transporter permease.	0.999
BDP_0897	BDP_1878	BDP_0897	BDP_1878	ATP binding protein of ABC transporter.	Solute binding protein of ABC transporter system, YodA-like protein.	0.993
BDP_1878	BDP_0392	BDP_1878	BDP_0392	Solute binding protein of ABC transporter system, YodA-like protein.	Solute binding protein of ABC transporter system.	0.463
BDP_1878	BDP_0896	BDP_1878	BDP_0896	Solute binding protein of ABC transporter system, YodA-like protein.	ABC transporter permease.	0.994
BDP_1878	BDP_0897	BDP_1878	BDP_0897	Solute binding protein of ABC transporter system, YodA-like protein.	ATP binding protein of ABC transporter.	0.993
BDP_1878	BDP_1884	BDP_1878	BDP_1884	Solute binding protein of ABC transporter system, YodA-like protein.	Hypothetical protein.	0.940
BDP_1878	purL	BDP_1878	BDP_0725	Solute binding protein of ABC transporter system, YodA-like protein.	purL Phosphoribosylformylglycinamidine synthase.	0.595