STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0409Amino acid permease. (499 aa)    
Predicted Functional Partners:
fdxC
fdxC Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
       0.703
murB
murB UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
  
    0.613
BDP_0411
Aminotransferase.
  
  
 0.541
rpmG
rpmG LSU ribosomal protein L33P; Belongs to the bacterial ribosomal protein bL33 family.
  
    0.506
BDP_1029
Pullulanase.
  
 0.478
BDP_0109
Sucrose phosphorylase.
   
 0.471
BDP_0111
Oligo-1,6-glucosidase.
   
 0.471
BDP_0364
Putative glycosidase.
   
 0.471
agl2
Agl2 Alpha-glucosidase.
   
 0.471
glgE
Alpha-amylase family protein; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.
   
 0.471
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.