Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fdxCfdxC Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (106 aa)    
Predicted Functional Partners:
BDP_0411
Aminotransferase.
    
 0.900
BDP_0062
ferredoxin/ferredoxin-NADP reductase.
 
 
 
 0.776
sdhA
SdhA Succinate dehydrogenase flavoprotein subunit.
  
 
 0.751
BDP_1079
Glutamate synthase [NADPH] small subunit.
   
 
 0.717
BDP_0409
Amino acid permease.
       0.683
murB
murB UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
       0.548
rpmG
rpmG LSU ribosomal protein L33P; Belongs to the bacterial ribosomal protein bL33 family.
  
    0.482
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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