Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BDP_0469Amino acid transport ATP-binding protein. (248 aa)    
Predicted Functional Partners:
gluA
Putative Glutamate transport ATP-binding protein gluA.
 
 0.976
BDP_0471
Solute-binding protein of ABC transporter system.
 
 
 0.945
BDP_0154
ABC-type transporter, permease component.
 
     
0.899
BDP_2113
ATP-binding and permease protein of ABC transporter system.
 
     
0.899
BDP_2114
ATP-binding and permease protein of ABC transporter system.
 
     
0.876
gluD
Glutamate transport system permease protein GluD.
 
 
 0.823
BDP_0700
Permease protein of ABC transporter system.
 
 0.822
glnP2
glnP2 Glutamine transport system permease protein glnP.
 
 
 0.798
BDP_0786
Permease protein of ABC transporter system.
 
 0.797
gluC
Glutamate transport system permease protein GluC.
 
 
 0.789
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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