STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0471Solute-binding protein of ABC transporter system. (288 aa)    
Predicted Functional Partners:
gluA
Putative Glutamate transport ATP-binding protein gluA.
 
 
 0.967
BDP_0469
Amino acid transport ATP-binding protein.
 
 
 0.960
BDP_0473
Putative hydrolase.
 
     0.779
gluC
Glutamate transport system permease protein GluC.
 
 
 0.767
BDP_0472
Hypothetical protein.
 
     0.654
gluD
Glutamate transport system permease protein GluD.
 
 
 0.630
BDP_0474
Putative S-adenosylhomocysteine hydrolase.
 
   
 0.568
glnP2
glnP2 Glutamine transport system permease protein glnP.
 
 
 0.498
BDP_0789
Glutamate transport ATP-binding protein gluA.
 
 
 0.488
BDP_0787
Glutamate transport ATP-binding protein gluA.
 
 
 0.485
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.