Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0471Solute-binding protein of ABC transporter system. (288 aa)    
Predicted Functional Partners:
gluA
Putative Glutamate transport ATP-binding protein gluA.
 
 
 0.957
BDP_0469
Amino acid transport ATP-binding protein.
 
 
 0.945
BDP_0473
Putative hydrolase.
 
     0.780
gluC
Glutamate transport system permease protein GluC.
 
 
 0.743
BDP_0472
Hypothetical protein.
 
     0.625
BDP_0474
Putative S-adenosylhomocysteine hydrolase.
 
     0.564
gluD
Glutamate transport system permease protein GluD.
 
 
 0.524
glnP2
glnP2 Glutamine transport system permease protein glnP.
 
 
 0.462
BDP_2161
Solute binding protein of ABC transporter system for sugars.
  
   
 0.432
glnP1
glnP1 Glutamine transport system permease protein glnP.
 
 
 0.426
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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