Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BDP_0473Putative hydrolase. (466 aa)    
Predicted Functional Partners:
BDP_0474
Putative S-adenosylhomocysteine hydrolase.
 
  
 0.938
BDP_0472
Hypothetical protein.
 
     0.812
BDP_0471
Solute-binding protein of ABC transporter system.
 
     0.780
gluA
Putative Glutamate transport ATP-binding protein gluA.
 
     0.766
radA
radA DNA repair protein; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
       0.726
upp
Uracil phophoribosyl transferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
  
 
 0.638
BDP_0063
Conserved hypothetical protein.
 
    0.593
BDP_0469
Amino acid transport ATP-binding protein.
 
   
 0.582
iunH
Inosine-uridine preferring nucleoside hydrolase.
  
 
 0.547
BDP_0476
Narrowly conserved hypothetical secreted protein.
       0.543
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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