STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0479Putative histidine kinase. (455 aa)    
Predicted Functional Partners:
BDP_0480
Putative response regulator of two-component system.
 
  
 0.936
BDP_0219
Two-component histidine protein kinase.
  
     0.721
virS-2
Two-component sensor kinase VirS.
  
   
 0.703
rnh
Rnh Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
     
 0.670
virR-4
VirR Two-component response regulator.
 
  
 0.632
BDP_0507
Two-component response regulator.
 
  
 0.565
virR-2
virR Two-component response regulator virR.
 
  
 0.546
virR-3
VirR Two-component response regulator.
 
  
 0.516
BDP_0218
Two-component response regulator.
 
  
 0.514
pgm
Pgm Phosphoglucomutase.
       0.440
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.