STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0488Sugar-binding lipoprotein of ABC transporter system. (452 aa)    
Predicted Functional Partners:
BDP_0491
ABC transporter system, sugar permease.
 
 
 0.950
BDP_0489
Sugar-binding protein of ABC transporter system.
 
   0.934
BDP_0487
Putative glycosidase.
 
    0.848
aga
Aga Alpha-galactosidase.
 
    0.663
BDP_2238
ATP-binding protein of ABC transporter system for sugars; Belongs to the ABC transporter superfamily.
  
 
 0.586
BDP_0492
LacI-type transcriptional regulator.
 
     0.532
BDP_0503
Narrowly conserved hypothetical membrane spanning protein.
  
    0.526
BDP_1061
Transcriptional regulator, PadR-like family.
  
     0.518
BDP_2155
Sugar ABC transporter, permease protein.
 
 
 0.509
BDP_0128
Mannosidase.
 
     0.475
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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