STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0492LacI-type transcriptional regulator. (345 aa)    
Predicted Functional Partners:
BDP_0102
LacI-type transcriptional regulator.
  
     0.758
BDP_1648
Transcriptional regulator, LacI family.
  
     0.636
BDP_1078
Glutamate synthase [NADPH] large subunit.
    
 
 0.572
BDP_0488
Sugar-binding lipoprotein of ABC transporter system.
 
     0.538
galE
galE UDP-glucose 4-epimerase.
  
 
 0.526
BDP_0489
Sugar-binding protein of ABC transporter system.
  
    0.509
BDP_0491
ABC transporter system, sugar permease.
       0.508
hpr
HPr family phosphocarrier.
   
 
 0.451
guaB
guaB Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
    
   0.408
guaA
GMP synthase glutamine amidotransferase; Catalyzes the synthesis of GMP from XMP.
    
   0.408
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.