STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0498Hypothetical protein. (258 aa)    
Predicted Functional Partners:
BDP_1930
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1(PTS system).
 
  
 0.854
ptsG
ptsG PTS system, glucose-specific IIABC component.
  
  
 0.814
BDP_0497
Aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.788
nagA1
NagA1 N-acetylglucosamine-6-phosphate deacetylase.
 
  
 0.650
BDP_2139
Multiple substrate aminotransferase (MsaT)containing domain of GntR family.
  
  
 0.611
BDP_0496
Amino acid permease.
       0.558
BDP_1318
Transcriptional regulator, AraC family.
  
  
 0.553
BDP_0327
Transcriptional regulator, MerR family.
  
  
 0.496
BDP_2248
Transcriptional regulator, GntR family.
  
  
 0.493
BDP_0882
Cell envelope-related transcriptional attenuator.
   
  
 0.479
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.