Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0509Two-component sensor kinase. (451 aa)    
Predicted Functional Partners:
BDP_0507
Two-component response regulator.
 
  
 0.960
virR-3
VirR Two-component response regulator.
 
  
 0.813
virR-4
VirR Two-component response regulator.
 
  
 0.811
virR-2
virR Two-component response regulator virR.
 
  
 0.810
BDP_0218
Two-component response regulator.
 
  
 0.797
BDP_0223
Hypothetical membrane-spannning protein.
 
     0.779
BDP_2210
Hypothetical membrane spanning protein.
 
     0.775
bgl5-2
Bgl5 Beta-glucosidase.
  
     0.774
bgl5-4
Bgl5 Beta-glucosidase.
  
     0.768
bgl5-5
Bgl5 Beta-glucosidase.
  
     0.760
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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