STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0530Conserved hypothetical membrane spanning protein. (197 aa)    
Predicted Functional Partners:
BDP_0633
Integral membrane protein.
 
     0.565
BDP_1773
Fibronectin type III domain-containing protein.
  
    0.563
BDP_2037
Conserved hypothetical protein.
 
   
 0.550
BDP_2165
Binding-protein-dependent transport systems inner membrane component.
  
    0.542
BDP_1532
Solute binding protein of ABC transporter system for peptides.
  
    0.540
BDP_1817
Conserved hypothetical protein.
 
   
 0.536
galE
galE UDP-glucose 4-epimerase.
       0.535
BDP_1779
FHA domain-containing protein.
 
     0.526
BDP_1563
Hypothetical protein.
 
   
 0.477
BDP_1776
Transglutaminase domain-containing protein.
  
     0.474
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.