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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
galEgalE UDP-glucose 4-epimerase. (336 aa)    
Predicted Functional Partners:
galT
GalT galactose-1-phosphate uridylyltransferase.
 
 0.996
galK
GalK galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
 
 
 0.981
BDP_2033
Nucleotide sugar dehydrogenase.
  
 
 0.928
BDP_0246
UDP-glactopyranose mutase.
    
 0.918
BDP_1163
UTP-glucose-1-phosphate uridylyltransferase.
    
 0.913
BDP_0533
Hypothetical protein.
       0.773
trmB
tRNA (m(7)G46) methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
       0.727
BDP_0102
LacI-type transcriptional regulator.
  
 
 0.643
rmlA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
     
 0.575
BDP_0530
Conserved hypothetical membrane spanning protein.
     
 0.533
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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