STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0536Sortase. (347 aa)    
Predicted Functional Partners:
BDP_0535
Hypothetical sortase-anchored surface protein with Cna protein B-type domain.
 
     0.883
BDP_0537
Hypothetical protein.
 
    0.795
BDP_0200
FimA fimbrial subunit-like cell surface protein.
 
     0.777
BDP_1875
Cell surface protein with gram positive anchor and Cna protein B-type domains.
 
     0.777
cna
Cell surface protein with gram positive anchor and Cna protein B-type domains.
 
     0.774
BDP_0277
Putative sortase-anchored surface protein.
 
     0.773
BDP_1224
Cell surface protein with gram positive anchor and Cna protein B-type domains.
 
     0.773
BDP_1999
Possible fimbrial subunit.
 
     0.734
cna-2
Cell surface protein with gram positive anchor and Cna protein B-type domains.
 
     0.718
BDP_1876
LPXTG cell wall surface protein, collagen binding domain.
 
     0.603
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.