STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0537Hypothetical protein. (143 aa)    
Predicted Functional Partners:
BDP_0536
Sortase.
 
    0.794
BDP_0144
Fimbrial subunit.
  
     0.677
BDP_0293
Transcriptional regulator, TetR family.
  
    0.578
BDP_1773
Fibronectin type III domain-containing protein.
  
     0.576
BDP_1776
Transglutaminase domain-containing protein.
  
     0.567
BDP_0535
Hypothetical sortase-anchored surface protein with Cna protein B-type domain.
 
     0.565
BDP_1779
FHA domain-containing protein.
  
     0.559
crcB
crcB-like protein, campher resistance; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.
  
     0.556
BDP_2085
Glutamine amidotransferase, class-II.
  
     0.496
BDP_0724
Conserved hypothetical protein.
  
     0.490
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.