STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0542Conserved hypothetical membrane spanning protein. (499 aa)    
Predicted Functional Partners:
BDP_0543
N-acetylglucosaminyltransferase.
  
  
 0.865
BDP_0553
Narrowly conserved hypothetical membrane spanning protein.
 
     0.769
BDP_0541
Probable glycosyltransferase.
  
  
 0.744
BDP_0545
Conserved hypothetical membrane spanning protein.
 
    0.724
BDP_0544
ATP-binding protein of ABC transporter system.
  
  
 0.693
BDP_0759
Conserved hypothetical protein.
 
  
 0.670
BDP_1580
Conserved hypothetical protein.
  
     0.653
tilS
Putative lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.
  
    0.639
BDP_0546
Conserved hypothetical secreted protein with D-Ala-D-Ala carboxypeptidase 3 (S13) domain.
       0.638
hprT
hprT Hypoxanthine-guanine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
       0.638
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.