STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0559Conserved hypothetical protein. (306 aa)    
Predicted Functional Partners:
BDP_1612
CTP synthase (UTP-ammonia lyase).
  
     0.657
BDP_0558
Conserved hypothetical amidohydrolase.
 
     0.616
crgA
Conserved hypothetical protein; Involved in cell division; Belongs to the CrgA family.
  
     0.576
BDP_0086
Conserved hypothetical protein.
  
     0.543
secE
secE Protein translocase subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.537
BDP_1991
Conserved hypothetical protein.
  
     0.506
BDP_1078
Glutamate synthase [NADPH] large subunit.
  
    0.485
BDP_1761
Conserved hypothetical protein.
  
     0.461
rfbF-2
dTDP-rhamnosyl transferase RfbF.
 
     0.461
BDP_0203
Conserved hypothetical protein.
  
     0.456
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.