Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
xylAXylose isomerase; Belongs to the xylose isomerase family. (448 aa)    
Predicted Functional Partners:
BDP_0575
Xylulose kinase.
 
 
 0.990
BDP_0562
alpha-L-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
  
 
 0.913
BDP_1534
Fructokinase.
    
 0.908
BDP_0568
Beta-1,4-xylosidase; Belongs to the glycosyl hydrolase 43 family.
  
 
 0.829
BDP_1677
Xylan beta-1,4-xylosidase; Belongs to the glycosyl hydrolase 43 family.
  
 
 0.829
BDP_2146
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
  
 
 0.829
BDP_0222
Glycoside hydrolase family 2; Belongs to the glycosyl hydrolase 2 family.
    
 0.812
BDP_0658
alpha-L-arabinofuranosidase.
    
 0.812
lacZ1
LacZ1 Beta-galactosidase.
    
 0.812
lacZ6
LacZ6 Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
    
 0.812
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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