STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0568Beta-1,4-xylosidase; Belongs to the glycosyl hydrolase 43 family. (543 aa)    
Predicted Functional Partners:
lacZ1-2
LacZ1 Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
  
  0.833
BDP_0567
Sugar-binding protein of ABC transporter system, permease.
  
    0.818
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
 
 0.818
BDP_0566
Permease protein of ABC transporter system for sugars.
  
    0.812
BDP_0565
Solute-binding protein of ABC transporter system(lactose).
  
    0.658
lacA
lacA Galactoside O-acetyltransferase.
       0.491
xylB
Xylulokinase.
  
  
 0.444
BDP_1703
Conserved hypothetical protein.
     
 0.404
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.