STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0575Xylulose kinase. (506 aa)    
Predicted Functional Partners:
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
 
 
 0.990
araD
L-ribulose-5-phosphate 4-epimerase.
  
 
 0.944
rpe1
Rpe1 Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
   
 0.922
BDP_0576
NagC/XylR-type transciptional regulator.
 
  
 0.780
galE
galE UDP-glucose 4-epimerase.
     
 0.646
BDP_0109
Sucrose phosphorylase.
      
 0.629
BDP_0036
Sortase.
      
 0.618
BDP_0142
Sortase.
      
 0.618
BDP_0197
Sortase.
      
 0.618
BDP_0536
Sortase.
      
 0.618
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.