Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0595Phage tape measure protein. (620 aa)    
Predicted Functional Partners:
BDP_0596
Conserved hypothetical protein.
       0.761
BDP_0597
Conserved hypothetical protein.
       0.609
BDP_0598
Hypothetical protein.
       0.609
BDP_0599
Conserved hypothetical protein.
       0.601
BDP_0600
Conserved hypothetical protein.
       0.589
BDP_0588
Phage-related portal protein.
 
  
 0.536
BDP_2045
Glucosyltransferase-S.
 
     0.519
BDP_0593
Conserved hypothetical protein.
       0.488
BDP_0594
Conserved hypothetical protein.
       0.464
BDP_2056
Surface protein C.
 
     0.462
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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