STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0622CTP synthase (UTP-ammonia lyase). (278 aa)    
Predicted Functional Partners:
BDP_1817
Conserved hypothetical protein.
  
     0.592
BDP_2037
Conserved hypothetical protein.
  
     0.588
BDP_1748
DNA polymerase III.
  
     0.540
BDP_1773
Fibronectin type III domain-containing protein.
  
     0.514
pyrG
CTP synthetase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.
     
  0.499
BDP_1776
Transglutaminase domain-containing protein.
  
     0.468
BDP_2000
Conserved hypothetical protein containing a von Willebrand factor type A (vWA) domain.
  
     0.455
BDP_1779
FHA domain-containing protein.
  
     0.434
BDP_0559
Conserved hypothetical protein.
  
     0.432
BDP_0181
Hypothetical membrane-spanning protein.
  
     0.423
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.