orn protein (Bifidobacterium dentium) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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[Homology]

Score

orn

Orn Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides. (217 aa)

Predicted Functional Partners:

BDP_0627

0.661

hrpA

0.647

BDP_0628

0.598

scrT-2

0.500

pnp

0.471

BDP_0631

0.465

rnj

0.456

rne

0.452

agl2

0.450

guaB

0.424

Your Current Organism:

Bifidobacterium dentium

NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDP_0627	BDP_0628	BDP_0627	BDP_0628	Hydrolase (HAD superfamily).	Helicase.	0.668
BDP_0627	orn	BDP_0627	BDP_0626	Hydrolase (HAD superfamily).	Orn Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	0.661
BDP_0628	BDP_0627	BDP_0628	BDP_0627	Helicase.	Hydrolase (HAD superfamily).	0.668
BDP_0628	orn	BDP_0628	BDP_0626	Helicase.	Orn Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	0.598
BDP_0631	orn	BDP_0631	BDP_0626	Single-strand DNA binding protein.	Orn Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	0.465
agl2	orn	BDP_0624	BDP_0626	Agl2 Alpha-glucosidase.	Orn Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	0.450
agl2	scrT-2	BDP_0624	BDP_0625	Agl2 Alpha-glucosidase.	scrT Sucrose transporter.	0.876
guaB	orn	BDP_0621	BDP_0626	guaB Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.	Orn Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	0.424
guaB	pnp	BDP_0621	BDP_0367	guaB Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.	Pnp Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	0.634
hrpA	orn	BDP_1561	BDP_0626	ATP-dependent helicase hrpA.	Orn Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	0.647
orn	BDP_0627	BDP_0626	BDP_0627	Orn Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	Hydrolase (HAD superfamily).	0.661
orn	BDP_0628	BDP_0626	BDP_0628	Orn Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	Helicase.	0.598
orn	BDP_0631	BDP_0626	BDP_0631	Orn Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	Single-strand DNA binding protein.	0.465
orn	agl2	BDP_0626	BDP_0624	Orn Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	Agl2 Alpha-glucosidase.	0.450
orn	guaB	BDP_0626	BDP_0621	Orn Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	guaB Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.	0.424
orn	hrpA	BDP_0626	BDP_1561	Orn Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	ATP-dependent helicase hrpA.	0.647
orn	pnp	BDP_0626	BDP_0367	Orn Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	Pnp Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	0.471
orn	rne	BDP_0626	BDP_0344	Orn Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	Rne Ribonuclease G.	0.452
orn	rnj	BDP_0626	BDP_1754	Orn Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	Beta-lactamase domain-containing protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.	0.456
orn	scrT-2	BDP_0626	BDP_0625	Orn Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	scrT Sucrose transporter.	0.500