Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene co-occurrence
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ftsXftsX Cell division protein ftsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily. (307 aa)    
Predicted Functional Partners:
ftsE
ftsE Cell division ATP-binding protein ftsE; Part of the ABC transporter FtsEX involved in cellular division.
 
 
 0.999
BDP_0524
Hypothetical NLP/P60 protein.
 
 
 0.888
prfB
prfB Bacterial Peptide Chain Release Factor 2 (RF-2); Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
     
 0.810
BDP_2262
Hypothetical secreted protein.
 
 
 
 0.802
BDP_0983
TraG-related protein.
 
 
 
 0.761
BDP_0643
CHAP domain containing protein.
 
   
 0.729
BDP_0599
Conserved hypothetical protein.
  
 
 0.658
smpB
smpB SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switch [...]
  
  
 0.606
BDP_1128
Conserved hypothetical protein.
   
 
 0.606
ftsQ
ftsQ Cell division protein ftsQ.
  
 
 
 0.537
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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