BDP_0645 protein (Bifidobacterium dentium) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BDP_0645

Solute-binding protein of ABC transporter system. (261 aa)

Predicted Functional Partners:

BDP_0647

0.904

BDP_0648

0.847

BDP_0700

0.761

gluC

0.552

gluD

0.531

glnP2

0.502

smpB

0.487

BDP_0646

0.484

BDP_0786

0.480

BDP_0789

0.467

Your Current Organism:

Bifidobacterium dentium

NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDP_0645	BDP_0646	BDP_0645	BDP_0646	Solute-binding protein of ABC transporter system.	Solute-binding protein of ABC transporter system; Belongs to the bacterial solute-binding protein 3 family.	0.484
BDP_0645	BDP_0647	BDP_0645	BDP_0647	Solute-binding protein of ABC transporter system.	Permease protein of ABC transporter system.	0.904
BDP_0645	BDP_0648	BDP_0645	BDP_0648	Solute-binding protein of ABC transporter system.	ATP-binding protein of ABC transporter system.	0.847
BDP_0645	BDP_0700	BDP_0645	BDP_0700	Solute-binding protein of ABC transporter system.	Permease protein of ABC transporter system.	0.761
BDP_0645	BDP_0786	BDP_0645	BDP_0786	Solute-binding protein of ABC transporter system.	Permease protein of ABC transporter system.	0.480
BDP_0645	BDP_0789	BDP_0645	BDP_0789	Solute-binding protein of ABC transporter system.	Glutamate transport ATP-binding protein gluA.	0.467
BDP_0645	glnP2	BDP_0645	BDP_0687	Solute-binding protein of ABC transporter system.	glnP2 Glutamine transport system permease protein glnP.	0.502
BDP_0645	gluC	BDP_0645	BDP_0791	Solute-binding protein of ABC transporter system.	Glutamate transport system permease protein GluC.	0.552
BDP_0645	gluD	BDP_0645	BDP_0792	Solute-binding protein of ABC transporter system.	Glutamate transport system permease protein GluD.	0.531
BDP_0645	smpB	BDP_0645	BDP_0644	Solute-binding protein of ABC transporter system.	smpB SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switch [...]	0.487
BDP_0646	BDP_0645	BDP_0646	BDP_0645	Solute-binding protein of ABC transporter system; Belongs to the bacterial solute-binding protein 3 family.	Solute-binding protein of ABC transporter system.	0.484
BDP_0646	BDP_0647	BDP_0646	BDP_0647	Solute-binding protein of ABC transporter system; Belongs to the bacterial solute-binding protein 3 family.	Permease protein of ABC transporter system.	0.905
BDP_0646	BDP_0648	BDP_0646	BDP_0648	Solute-binding protein of ABC transporter system; Belongs to the bacterial solute-binding protein 3 family.	ATP-binding protein of ABC transporter system.	0.868
BDP_0646	BDP_0700	BDP_0646	BDP_0700	Solute-binding protein of ABC transporter system; Belongs to the bacterial solute-binding protein 3 family.	Permease protein of ABC transporter system.	0.811
BDP_0646	BDP_0789	BDP_0646	BDP_0789	Solute-binding protein of ABC transporter system; Belongs to the bacterial solute-binding protein 3 family.	Glutamate transport ATP-binding protein gluA.	0.567
BDP_0646	glnP2	BDP_0646	BDP_0687	Solute-binding protein of ABC transporter system; Belongs to the bacterial solute-binding protein 3 family.	glnP2 Glutamine transport system permease protein glnP.	0.652
BDP_0646	gluC	BDP_0646	BDP_0791	Solute-binding protein of ABC transporter system; Belongs to the bacterial solute-binding protein 3 family.	Glutamate transport system permease protein GluC.	0.648
BDP_0646	gluD	BDP_0646	BDP_0792	Solute-binding protein of ABC transporter system; Belongs to the bacterial solute-binding protein 3 family.	Glutamate transport system permease protein GluD.	0.626
BDP_0647	BDP_0645	BDP_0647	BDP_0645	Permease protein of ABC transporter system.	Solute-binding protein of ABC transporter system.	0.904
BDP_0647	BDP_0646	BDP_0647	BDP_0646	Permease protein of ABC transporter system.	Solute-binding protein of ABC transporter system; Belongs to the bacterial solute-binding protein 3 family.	0.905