STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0646Solute-binding protein of ABC transporter system; Belongs to the bacterial solute-binding protein 3 family. (308 aa)    
Predicted Functional Partners:
BDP_0647
Permease protein of ABC transporter system.
 
 0.905
BDP_0648
ATP-binding protein of ABC transporter system.
 
 
 0.868
BDP_0700
Permease protein of ABC transporter system.
 
 0.811
glnP2
glnP2 Glutamine transport system permease protein glnP.
 
 0.652
gluC
Glutamate transport system permease protein GluC.
 
 
 0.648
gluD
Glutamate transport system permease protein GluD.
 
 
 0.626
BDP_0789
Glutamate transport ATP-binding protein gluA.
 
 
 0.567
BDP_0787
Glutamate transport ATP-binding protein gluA.
 
 
 0.548
gluA
Putative Glutamate transport ATP-binding protein gluA.
 
 
 0.505
glnQ
glnQ Glutamine transport ATP-binding protein glnQ.
 
 
 0.490
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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