STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0664Permease protein of ABC transporter system for peptides. (305 aa)    
Predicted Functional Partners:
BDP_0665
Permease protein of ABC transporter system for peptides.
 
  
 0.982
BDP_0666
ATP-binding protein of ABC transporter system for peptides.
  
 0.974
BDP_0667
ATP-binding protein of ABC transporter system for peptides.
  
 0.971
BDP_0663
Solute binding protein of ABC transporter systemy for peptides.
 
 0.967
oppC1
oppC1 Oligopeptide transport system permease protein oppC.
  
 0.888
oppD1
oppD1 Oligopeptide transport ATP-binding protein oppD.
 
  
 0.882
BDP_1975
Solute binding protein of ABC transporter system for peptides.
 
 0.871
oppD2-2
oppD2 Oligopeptide transport ATP-binding protein oppD; Belongs to the ABC transporter superfamily.
 
  
 0.822
oppD2
oppD2 Oligopeptide transport ATP-binding protein oppD; Belongs to the ABC transporter superfamily.
  
 0.812
BDP_0797
Solute binding protein of ABC transporter system for peptides.
 
  
 0.741
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.