STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0666ATP-binding protein of ABC transporter system for peptides. (262 aa)    
Predicted Functional Partners:
BDP_0665
Permease protein of ABC transporter system for peptides.
  
 0.988
BDP_0664
Permease protein of ABC transporter system for peptides.
  
 0.974
oppC1
oppC1 Oligopeptide transport system permease protein oppC.
  
 0.969
oppD1
oppD1 Oligopeptide transport ATP-binding protein oppD.
  
 0.966
BDP_0663
Solute binding protein of ABC transporter systemy for peptides.
 
  
 0.897
BDP_0667
ATP-binding protein of ABC transporter system for peptides.
 
    
0.884
oppB2
oppB2 Oligopeptide transport system permease protein oppB.
  
 0.793
oppB2-2
oppB2 Oligopeptide transport system permease protein oppB.
  
 0.786
BDP_1338
ATP-binding protein of ABC transporter system.
 
 
0.670
BDP_1975
Solute binding protein of ABC transporter system for peptides.
 
  
 0.643
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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