cysE protein (Bifidobacterium dentium) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

cysE

cysE Serine O-acetyltransferase. (175 aa)

Predicted Functional Partners:

luxS

0.658

recQ

0.574

BDP_0256

0.457

alr

0.441

BDP_0033

0.420

dgt

0.414

dnaG

0.410

Your Current Organism:

Bifidobacterium dentium

NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDP_0033	cysE	BDP_0033	BDP_0676	Possible N6-adenine-specific methylase.	cysE Serine O-acetyltransferase.	0.420
BDP_0256	cysE	BDP_0256	BDP_0676	Dipeptidase.	cysE Serine O-acetyltransferase.	0.457
alr	cysE	BDP_0678	BDP_0676	Alr Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.	cysE Serine O-acetyltransferase.	0.441
alr	dgt	BDP_0678	BDP_0679	Alr Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.	Dgt Deoxyguanosinetriphosphate triphosphohydrolase.	0.482
alr	dnaG	BDP_0678	BDP_0680	Alr Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.	dnaG DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	0.414
alr	luxS	BDP_0678	BDP_0675	Alr Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.	luxS Autoinducer-2 production protein luxS; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family.	0.414
cysE	BDP_0033	BDP_0676	BDP_0033	cysE Serine O-acetyltransferase.	Possible N6-adenine-specific methylase.	0.420
cysE	BDP_0256	BDP_0676	BDP_0256	cysE Serine O-acetyltransferase.	Dipeptidase.	0.457
cysE	alr	BDP_0676	BDP_0678	cysE Serine O-acetyltransferase.	Alr Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.	0.441
cysE	dgt	BDP_0676	BDP_0679	cysE Serine O-acetyltransferase.	Dgt Deoxyguanosinetriphosphate triphosphohydrolase.	0.414
cysE	dnaG	BDP_0676	BDP_0680	cysE Serine O-acetyltransferase.	dnaG DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	0.410
cysE	luxS	BDP_0676	BDP_0675	cysE Serine O-acetyltransferase.	luxS Autoinducer-2 production protein luxS; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family.	0.658
cysE	recQ	BDP_0676	BDP_0673	cysE Serine O-acetyltransferase.	recQ ATP-dependent DNA helicase recQ.	0.574
dgt	alr	BDP_0679	BDP_0678	Dgt Deoxyguanosinetriphosphate triphosphohydrolase.	Alr Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.	0.482
dgt	cysE	BDP_0679	BDP_0676	Dgt Deoxyguanosinetriphosphate triphosphohydrolase.	cysE Serine O-acetyltransferase.	0.414
dgt	dnaG	BDP_0679	BDP_0680	Dgt Deoxyguanosinetriphosphate triphosphohydrolase.	dnaG DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	0.824
dnaG	alr	BDP_0680	BDP_0678	dnaG DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	Alr Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.	0.414
dnaG	cysE	BDP_0680	BDP_0676	dnaG DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	cysE Serine O-acetyltransferase.	0.410
dnaG	dgt	BDP_0680	BDP_0679	dnaG DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	Dgt Deoxyguanosinetriphosphate triphosphohydrolase.	0.824
luxS	alr	BDP_0675	BDP_0678	luxS Autoinducer-2 production protein luxS; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family.	Alr Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.	0.414