STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dgtDgt Deoxyguanosinetriphosphate triphosphohydrolase. (233 aa)    
Predicted Functional Partners:
BDP_0904
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
  0.900
BDP_1244
Conserved hypothetical protein.
     
  0.900
nrdD
nrdD Anaerobic ribonucleoside-triphosphate reductase.
    
  0.900
BDP_1739
5 nucleotidase deoxy cytosolic type C.
     
  0.900
dnaG
dnaG DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
 
   
 0.824
BDP_0028
Conserved hypothetical protein.
  
     0.725
secE
secE Protein translocase subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.723
BDP_1216
DNA polymerase III, delta subunit.
  
     0.677
crgA
Conserved hypothetical protein; Involved in cell division; Belongs to the CrgA family.
  
     0.648
BDP_1485
ABC-type Mn2+/Zn2+ transport systems, permease components.
  
   
 0.615
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.