Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
glnHglnH Glutamine-binding protein glnH. (276 aa)    
Predicted Functional Partners:
glnP1
glnP1 Glutamine transport system permease protein glnP.
 
 0.993
glnP2
glnP2 Glutamine transport system permease protein glnP.
 
 
 0.922
BDP_0698
ATP-binding protein of ABC transporter system for amino acids.
  
 0.922
glnQ
glnQ Glutamine transport ATP-binding protein glnQ.
 
 
 0.906
glnH-2
glnH Glutamine-binding protein glnH.
     
  0.900
gluC
Glutamate transport system permease protein GluC.
 
 
 0.688
BDP_0691
2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
  
    0.511
BDP_0694
Conserved hypothetical protein.
 
   
 0.480
BDP_0789
Glutamate transport ATP-binding protein gluA.
 
 
 0.427
gluD
Glutamate transport system permease protein GluD.
 
 
 0.420
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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