STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0759Conserved hypothetical protein. (811 aa)    
Predicted Functional Partners:
BDP_2265
Conserved hypothetical protein.
 
     0.768
pyrE-2
Orotate phosphoribosyltransferase PyrE.
 
     0.765
BDP_0379
Narrowly conserved hypothetical protein.
  
   
 0.756
BDP_0503
Narrowly conserved hypothetical membrane spanning protein.
  
   
 0.749
BDP_1401
Putative DNA binding protein.
  
   
 0.747
BDP_0476
Narrowly conserved hypothetical secreted protein.
  
     0.741
lysM
LysM domain protein.
  
   
 0.738
BDP_1580
Conserved hypothetical protein.
  
     0.731
BDP_1938
Conserved hypothetical protein.
  
     0.706
BDP_1615
Hydrolases of the alpha/beta superfamily.
  
     0.689
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.