Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0776Two component system histidine kinase. (615 aa)    
Predicted Functional Partners:
BDP_0775
Two-component response regulator.
 
 
 0.969
BDP_0892
Response regulator of two-component system.
 
 
 0.842
BDP_0774
Conserved hypothetical protein.
     
 0.814
vicR
Response regulator protein VicR.
 
 
 0.804
BDP_0773
Conserved hypothetical protein; Belongs to the WXG100 family.
 
   
 0.629
cspB
cspB Cold shock protein.
  
  
 0.626
BDP_0057
Serine protease.
  
 0.604
BDP_0778
Conserved hypothetical protein.
       0.588
BDP_1973
Response regulator-like transcriptional regulatory protein.
 
 
 0.572
BDP_0519
Pho-related sensory transduction protein kinase.
 
 
0.509
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.