STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uspAUspA domain protein. (339 aa)    
Predicted Functional Partners:
clpC
clpC Negative regulator of genetic competence clpC/mecB; Belongs to the ClpA/ClpB family.
  
  
 0.619
BDP_0752
Proteasome-associated protein.
  
     0.589
BDP_1615
Hydrolases of the alpha/beta superfamily.
  
     0.587
BDP_1580
Conserved hypothetical protein.
  
     0.584
BDP_1180
Branched-chain amino acid transport ATP-binding protein.
 
     0.581
pafA
Proteasome-associated protein; Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side- chain amino group of a substrate lysine.
  
     0.575
cyaB
Adenylate cyclase.
 
     0.539
BDP_0759
Conserved hypothetical protein.
  
     0.536
arc
AAA family ATPase.
  
  
 0.531
BDP_1621
Conserved hypothetical protein.
  
     0.508
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.