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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0786Permease protein of ABC transporter system. (443 aa)    
Predicted Functional Partners:
BDP_0787
Glutamate transport ATP-binding protein gluA.
 0.996
BDP_0789
Glutamate transport ATP-binding protein gluA.
 
 0.930
BDP_0648
ATP-binding protein of ABC transporter system.
 
 0.910
glnQ
glnQ Glutamine transport ATP-binding protein glnQ.
 
 0.854
BDP_0698
ATP-binding protein of ABC transporter system for amino acids.
 
 0.853
BDP_0469
Amino acid transport ATP-binding protein.
 
 0.852
gluD
Glutamate transport system permease protein GluD.
 
0.744
gluC
Glutamate transport system permease protein GluC.
0.734
glnP2
glnP2 Glutamine transport system permease protein glnP.
 
0.607
glnP1
glnP1 Glutamine transport system permease protein glnP.
0.607
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.