STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gluDGlutamate transport system permease protein GluD. (377 aa)    
Predicted Functional Partners:
gluB
Glutamate-binding protein GluB; Belongs to the bacterial solute-binding protein 3 family.
 
 0.993
BDP_0789
Glutamate transport ATP-binding protein gluA.
 
 0.990
gluC
Glutamate transport system permease protein GluC.
 
0.981
BDP_1221
Predicted solute binding protein of ABC transporter system.
 
 0.965
BDP_0787
Glutamate transport ATP-binding protein gluA.
 
 
 0.896
BDP_0648
ATP-binding protein of ABC transporter system.
 
 
 0.849
glnQ
glnQ Glutamine transport ATP-binding protein glnQ.
 
 
 0.843
BDP_0469
Amino acid transport ATP-binding protein.
 
 
 0.823
BDP_0698
ATP-binding protein of ABC transporter system for amino acids.
 
 
 0.768
BDP_0786
Permease protein of ABC transporter system.
 
0.721
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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