Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BDP_0807Endonuclease; Belongs to the UPF0102 family. (150 aa)    
Predicted Functional Partners:
BDP_0806
ATPase-like magnesium chelatase subunit ChlI.
 
  
 0.952
smf
Smf protein.
 
  
 0.845
BDP_0809
Pyridoxine kinase; Belongs to the pyridoxine kinase family.
       0.633
sdhA
SdhA Succinate dehydrogenase flavoprotein subunit.
       0.618
BDP_1217
COME operon protein 3.
  
    0.504
ruvC
Crossover junction endodeoxyribonuclease ruvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
 
     0.502
metY-2
MetY O-acetylhomoserine aminocarboxypropyltransferase.
       0.461
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
   
 0.456
BDP_0811
Conserved hypothetical protein.
       0.439
safC
SafC Caffeoyl-CoA O-methyltransferase.
       0.438
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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