pap protein (Bifidobacterium dentium) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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experimentally determined

co-expression

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[Homology]

Score

pap

Pap Proline iminopeptidase. (445 aa)

Predicted Functional Partners:

proC

0.796

ychF

0.707

BDP_0819

0.635

BDP_0818

0.629

rnh

0.490

BDP_0340

0.472

lexA

0.441

Your Current Organism:

Bifidobacterium dentium

NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDP_0340	pap	BDP_0340	BDP_0820	ATP-binding protein of ABC transporter system.	Pap Proline iminopeptidase.	0.472
BDP_0818	BDP_0819	BDP_0818	BDP_0819	Two-component response regulator.	Two component system histidine kinase.	0.962
BDP_0818	pap	BDP_0818	BDP_0820	Two-component response regulator.	Pap Proline iminopeptidase.	0.629
BDP_0818	proC	BDP_0818	BDP_0821	Two-component response regulator.	ProC Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.	0.605
BDP_0818	ychF	BDP_0818	BDP_0822	Two-component response regulator.	GTP-binding protein, probable translation factor; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.	0.536
BDP_0819	BDP_0818	BDP_0819	BDP_0818	Two component system histidine kinase.	Two-component response regulator.	0.962
BDP_0819	pap	BDP_0819	BDP_0820	Two component system histidine kinase.	Pap Proline iminopeptidase.	0.635
BDP_0819	proC	BDP_0819	BDP_0821	Two component system histidine kinase.	ProC Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.	0.621
BDP_0819	ychF	BDP_0819	BDP_0822	Two component system histidine kinase.	GTP-binding protein, probable translation factor; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.	0.560
lexA	pap	BDP_1556	BDP_0820	LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response).	Pap Proline iminopeptidase.	0.441
pap	BDP_0340	BDP_0820	BDP_0340	Pap Proline iminopeptidase.	ATP-binding protein of ABC transporter system.	0.472
pap	BDP_0818	BDP_0820	BDP_0818	Pap Proline iminopeptidase.	Two-component response regulator.	0.629
pap	BDP_0819	BDP_0820	BDP_0819	Pap Proline iminopeptidase.	Two component system histidine kinase.	0.635
pap	lexA	BDP_0820	BDP_1556	Pap Proline iminopeptidase.	LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response).	0.441
pap	proC	BDP_0820	BDP_0821	Pap Proline iminopeptidase.	ProC Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.	0.796
pap	rnh	BDP_0820	BDP_0478	Pap Proline iminopeptidase.	Rnh Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	0.490
pap	ychF	BDP_0820	BDP_0822	Pap Proline iminopeptidase.	GTP-binding protein, probable translation factor; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.	0.707
proC	BDP_0818	BDP_0821	BDP_0818	ProC Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.	Two-component response regulator.	0.605
proC	BDP_0819	BDP_0821	BDP_0819	ProC Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.	Two component system histidine kinase.	0.621
proC	pap	BDP_0821	BDP_0820	ProC Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.	Pap Proline iminopeptidase.	0.796