STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0836Phosphoglycerate mutase. (268 aa)    
Predicted Functional Partners:
pyrP
pyrP Uracil permease.
     
 0.696
fabG
FabG 3-oxoacyl-[acyl-carrier protein] reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.624
BDP_0835
Transcriptional regulator, AraC family.
       0.568
BDP_1334
ATP-binding protein of ABC transporter system.
 
    0.564
BDP_0144
Fimbrial subunit.
  
     0.534
crcB
crcB-like protein, campher resistance; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.
 
    0.460
BDP_0997
Restriction endonuclease.
  
     0.453
BDP_0234
Phosphohydrolase, calcineurin-like phosphoesterase.
  
  
 0.434
BDP_2085
Glutamine amidotransferase, class-II.
  
     0.430
BDP_0833
Permease.
 
     0.414
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.