STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0856Flavodoxin. (168 aa)    
Predicted Functional Partners:
BDP_1058
Conserved hypothetical protein.
 
    0.752
BDP_0858
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
  
 0.749
BDP_0830
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
 
    0.560
aroG2-2
aroG2 3-deoxy-7-phosphoheptulonate synthase, Phe-sensitive.
       0.478
BDP_1110
4-carboxymuconolactone decarboxylase.
 
    0.470
BDP_1595
Aldo/keto reductase family.
    0.453
BDP_1596
Transcriptional regulator, MerR family.
 
     0.428
guaB
guaB Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
   
   0.425
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.