aroG2-2 protein (Bifidobacterium dentium) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

aroG2-2

aroG2 3-deoxy-7-phosphoheptulonate synthase, Phe-sensitive. (260 aa)

Predicted Functional Partners:

pldB

0.679

sdhB

0.657

sdhA

0.606

BDP_0858

0.523

BDP_0856

0.478

atpG

0.478

BDP_1316

0.444

BDP_2115

0.444

BDP_2129

0.444

BDP_0375

0.441

Your Current Organism:

Bifidobacterium dentium

NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDP_0375	aroG2-2	BDP_0375	BDP_0857	U32-family peptidase.	aroG2 3-deoxy-7-phosphoheptulonate synthase, Phe-sensitive.	0.441
BDP_0856	BDP_0858	BDP_0856	BDP_0858	Flavodoxin.	Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.	0.749
BDP_0856	aroG2-2	BDP_0856	BDP_0857	Flavodoxin.	aroG2 3-deoxy-7-phosphoheptulonate synthase, Phe-sensitive.	0.478
BDP_0858	BDP_0856	BDP_0858	BDP_0856	Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.	Flavodoxin.	0.749
BDP_0858	aroG2-2	BDP_0858	BDP_0857	Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.	aroG2 3-deoxy-7-phosphoheptulonate synthase, Phe-sensitive.	0.523
BDP_1316	aroG2-2	BDP_1316	BDP_0857	Lipase.	aroG2 3-deoxy-7-phosphoheptulonate synthase, Phe-sensitive.	0.444
BDP_2115	aroG2-2	BDP_2115	BDP_0857	Lipase.	aroG2 3-deoxy-7-phosphoheptulonate synthase, Phe-sensitive.	0.444
BDP_2129	aroG2-2	BDP_2129	BDP_0857	Xylan esterase.	aroG2 3-deoxy-7-phosphoheptulonate synthase, Phe-sensitive.	0.444
aroG2-2	BDP_0375	BDP_0857	BDP_0375	aroG2 3-deoxy-7-phosphoheptulonate synthase, Phe-sensitive.	U32-family peptidase.	0.441
aroG2-2	BDP_0856	BDP_0857	BDP_0856	aroG2 3-deoxy-7-phosphoheptulonate synthase, Phe-sensitive.	Flavodoxin.	0.478
aroG2-2	BDP_0858	BDP_0857	BDP_0858	aroG2 3-deoxy-7-phosphoheptulonate synthase, Phe-sensitive.	Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.	0.523
aroG2-2	BDP_1316	BDP_0857	BDP_1316	aroG2 3-deoxy-7-phosphoheptulonate synthase, Phe-sensitive.	Lipase.	0.444
aroG2-2	BDP_2115	BDP_0857	BDP_2115	aroG2 3-deoxy-7-phosphoheptulonate synthase, Phe-sensitive.	Lipase.	0.444
aroG2-2	BDP_2129	BDP_0857	BDP_2129	aroG2 3-deoxy-7-phosphoheptulonate synthase, Phe-sensitive.	Xylan esterase.	0.444
aroG2-2	atpG	BDP_0857	BDP_1954	aroG2 3-deoxy-7-phosphoheptulonate synthase, Phe-sensitive.	ATP synthase gamma chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.	0.478
aroG2-2	pldB	BDP_0857	BDP_0049	aroG2 3-deoxy-7-phosphoheptulonate synthase, Phe-sensitive.	Lysophospholipase PldB.	0.679
aroG2-2	sdhA	BDP_0857	BDP_0804	aroG2 3-deoxy-7-phosphoheptulonate synthase, Phe-sensitive.	SdhA Succinate dehydrogenase flavoprotein subunit.	0.606
aroG2-2	sdhB	BDP_0857	BDP_0803	aroG2 3-deoxy-7-phosphoheptulonate synthase, Phe-sensitive.	SdhB Succinate dehydrogenase iron-sulfur protein.	0.657
atpG	aroG2-2	BDP_1954	BDP_0857	ATP synthase gamma chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.	aroG2 3-deoxy-7-phosphoheptulonate synthase, Phe-sensitive.	0.478
atpG	sdhA	BDP_1954	BDP_0804	ATP synthase gamma chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.	SdhA Succinate dehydrogenase flavoprotein subunit.	0.660