Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0881DNA segregation ATPase-like protein. (607 aa)    
Predicted Functional Partners:
BDP_0773
Conserved hypothetical protein; Belongs to the WXG100 family.
 
 
 0.741
BDP_1576
CD9/CD37/CD63 antigen.
  
 
 0.736
BDP_1575
Conserved hypothetical protein; Belongs to the WXG100 family.
  
 
 0.701
BDP_0882
Cell envelope-related transcriptional attenuator.
  
  
 0.693
whiB
WhiB-type transcription regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
       0.684
BDP_0886
Conserved hypothetical protein.
 
     0.611
parB
Chromosome partitioning protein ParB; Belongs to the ParB family.
  
  
 0.596
BDP_1572
Serine protease.
 
 
 0.586
glnD-2
glnD [protein-PII] uridylyltransferase; Belongs to the WXG100 family.
  
 
 0.582
lytR
Cell envelope-related transcriptional attenuator.
  
  
 0.557
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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