STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0882Cell envelope-related transcriptional attenuator. (471 aa)    
Predicted Functional Partners:
lytR
Cell envelope-related transcriptional attenuator.
 
   
0.886
BDP_0881
DNA segregation ATPase-like protein.
  
  
 0.693
BDP_2219
SIR2 family protein.
  
    0.693
whiB
WhiB-type transcription regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
       0.589
BDP_1980
Transcriptional regulator, AsnC family.
   
    0.563
BDP_0759
Conserved hypothetical protein.
  
   
 0.516
jag
Jag protein.
 
     0.508
BDP_0244
Penicillin-binding protein.
  
   
 0.506
BDP_1419
Ribosome-associated factor Y.
 
     0.497
BDP_0886
Conserved hypothetical protein.
 
     0.487
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.