STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0888Conserved hypothetical protein. (133 aa)    
Predicted Functional Partners:
BDP_0890
Conserved hypothetical protein.
 
     0.728
BDP_0889
HAD family hydrolase.
       0.695
BDP_0213
Type II secretion system protein, pilus assembly.
  
     0.646
BDP_1401
Putative DNA binding protein.
  
   
 0.646
BDP_0983
TraG-related protein.
  
     0.630
BDP_0778
Conserved hypothetical protein.
  
     0.629
BDP_1216
DNA polymerase III, delta subunit.
  
     0.629
BDP_1764
MFS superfamily transporter.
  
     0.624
BDP_1621
Conserved hypothetical protein.
  
     0.614
BDP_1180
Branched-chain amino acid transport ATP-binding protein.
  
     0.584
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.